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Division of Infectious Diseases & Hospital Epidemiology

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Haller S, Güsewell S, Egger T, Scanferla G, Thoma R, Leal-Neto O B, Flury D, Brucher A, Lemmenmeier E, Möller J C, Rieder P, Rütti M, Stocker R, Vuichard-Gysin D, Wiggli B, Besold U, Kuster S, McGeer A, Risch L, Schlegel M, Friedl A, Vernazza P, Kahlert C R, Kohler P. Impact of respirator versus surgical masks on SARS-CoV-2 acquisition in healthcare workers: a prospective multicentre cohort. Antimicrob Resist Infect Control 2022; 11:27.
   
Rüfenacht S, Gantenbein P, Boggian K, Flury D, Kern L, Dollenmaier G, Kohler P, Albrich W. Remdesivir in Coronavirus Disease 2019 patients treated with anti-CD20 monoclonal antibodies: a case series. Infection 2022;.
   
Lunjani N, Albrich W, Suh N, Barda B, Finnegan L A, Dam S A, Walter J, Sadlier C, Horgan M, O'Toole P W, O'Mahony L. Higher Levels of Bacterial DNA in Serum Associate with Severe and Fatal COVID-19. Allergy 2022;.
   
Collaborative Initiative For Paediatric HIV Education And Research (CIPHER) Global Cohort Collaboration , Jesson J, Crichton S, Quartagno M, Yotebieng M, Abrams E J, Chokephaibulkit K, Le Coeur S, Aké-Assi M H, Patel K, Pinto J, Paul M, Vreeman R, Davies M A, Ben-Farhat J, Van Dyke R, Judd A, Mofenson L, Vicari M, Seage G, Bekker L G, Essajee S, Gibb D, Penazzato M, Collins I J, Wools-Kaloustian K, Slogrove A, Powis K, Williams P, Matshaba M, Thahane L, Nyasulu P, Lukhele B, Mwita L, Kekitiinwa-Rukyalekere A, Wanless S, Goetghebuer T, Thorne C, Warszawski J, Galli L, Van Rossum A M C, Giaquinto C, Marczynska M, Marques L, Prata F, Ene L, Okhonskaya L, Navarro M, Frick A, Naver L, Kahlert C R, Volokha A, Chappell E, Pape J W, Rouzier V, Marcelin A, Succi R, Sohn A H, Kariminia A, Edmonds A, Lelo P, Lyamuya R, Ogalo E A, Odhiambo F A, Haas A D, Bolton C, Muhairwe J, Tweya H, Sylla M, D'Almeida M, Renner L, Abzug M J, Oleske J, Purswani M, Teasdale C, Nuwagaba-Biribonwoha H, Goodall R, Leroy V. Growth and CD4 patterns of adolescents living with perinatally acquired HIV worldwide, a CIPHER cohort collaboration analysis. J Int AIDS Soc 2022; 25:e25871.
   
Seneghini M, Rüfenacht S, Babouee Flury B, Flury D, Schlegel M, Kuster S, Kohler P. It is complicated: Potential short- and long-term impact of coronavirus disease 2019 (COVID-19) on antimicrobial resistance—An expert review. Antimicrobial Stewardship & Healthcare Epidemiology 2022;.
   
Strahm C, Seneghini M, Güsewell S, Egger T, Leal-Neto O, Brucher A, Lemmenmeier E, Meier Kleeb D, Möller J C, Rieder P, Ruetti M, Rutz R, Schmid H R, Stocker R, Vuichard-Gysin D, Wiggli B, Besold U, Kuster S, McGeer A, Risch L, Friedl A, Schlegel M, Schmid D, Vernazza P, Kahlert C R, Kohler P. Symptoms Compatible With Long Coronavirus Disease (COVID) in Healthcare Workers With and Without Severe Acute Respiratory Syndrome Coronavirus 2 (SARSCoV-2) Infection—Results of a Prospective Multicenter Cohort. Clinical Infectious Diseases (CID) 2022;1-9.
   
Gazzotti A, De Crom-Beer S, Haller S, Hasler T, Anagnostopoulos A, Hatz C, Fehr J. Ready-To-Go Questionnaire - Development and validation of a novel medical pre-travel risk stratification tool. Travel Medicine and Infectious Disease 2022; 47:.
   
Hachfeld A, Atkinson A, Stute P, Calmy A, Tarr P, Darling K, Babouee Flury B, Polli C, Sultan-Beyer L, Abela I, Aebi-Popp K. Women with HIV transitioning through menopause: Insights from the Swiss HIV Cohort Study (SHCS). HIV Medicine 2022;.
   
Sadlier C, Albrich W, Neogi U, Lunjani N, Horgan M, O'Toole P W, O'Mahony L. Metabolic rewiring and serotonin depletion in patients with postacute sequelae of COVID-19. Allergy 2022;.
   
Babouee Flury B. Similar but different: Integrated phylogenetic analysis of Austrian and Swiss HIV-1 sequences reveal differences in transmission patterns of the local HIV-1 epidemics. 2022;.
   
Sumer J, Flury D, Kahlert C R, Mueller N J, Risch L, Nigg S, Seneghini M, Vernazza P, Schlegel M, Kohler P. Safety Evaluation of a Medical Congress Held During the COVID-19 Pandemic-A Prospective Cohort. Int J Public Health 2022; 67:1604147.
   
Babouee Flury B. Similar but different: Integrated phylogenetic analysis of Austrian and Swiss HIV-1 sequences reveal differences in transmission patterns of the local HIV-1 epidemics. 2022;.
   
Thoma R, Seneghini M, Seiffert S N, Vuichard Gysin D, Scanferla G, Haller S, Flury D, Boggian K, Kleger G R, Filipovic M, Nolte O, Schlegel M, Kohler P. The challenge of preventing and containing outbreaks of multidrug-resistant organisms and Candida auris during the coronavirus disease 2019 pandemic: report of a carbapenem-resistant Acinetobacter baumannii outbreak and a systematic review of the literature. Antimicrob Resist Infect Control 2022; 11:12.
   
König R S, Albrich W, Kahlert C R, Bahr L S, Löber U, Vernazza P, Scheibenbogen C, Forslund S K. The Gut Microbiome in Myalgic Encephalomyelitis (ME)/Chronic Fatigue Syndrome (CFS). Front Immunol 2022; 12:628741.
   
Notter J, Seiffert S N, Zimmermann-Kogadeeva M, Bösch A, Wenger R, Strahm C, Frischknecht M, Livermore D M, Babouee Flury B. AmpC hyperproduction in a Cedecea davisae implant-associated bone infection during treatment: a case report and therapeutic implications. BMC Infect Dis 2022; 22:33.
   
Speierer A, Chocano-Bedoya P O, Anker D, Schmid A, Keidel D, Vermes T, Imboden M, Levati S, Franscella G, Corna L, Amati R, Harju E, Luedi C, Michel G, Veys-Takeuchi C, Zuppinger C, Nusslé S G, D'Acremont V, Tall I, Salberg , Baysson H, Lorthe E, Pennacchio F, Frei A, Kaufmann M, Geigges M, West E A, Schwab N, Cullati S, Chiolero A, Kahlert C R, Stringhini S, Vollrath F, Probst-Hensch N, Rodondi N, Puhan M A, Von Wyl V. The Corona Immunitas Digital Follow-Up eCohort to Monitor Impacts of the SARS-CoV-2 Pandemic in Switzerland: Study Protocol and First Results. Int J Public Health 2022; 67:1604506.
   
Sumer J, Haller S, Sawatzki M, Kellner J, Boggian K. An unusual case of multiple hepatic and pulmonary abscesses caused by Aggregatibacter aphrophilus in a young man: a case report. J Med Case Rep 2021; 15:34.
   
Sieber P, Flury D, Guesewell S, Albrich W, Boggian K, Gardiol C, Schlegel M, Sieber R, Vernazza P, Kohler P. Characteristics of patients with Coronavirus Disease 2019 (COVID-19) and seasonal influenza at time of hospital admission: a single center comparative study. BMC Infect Dis 2021; 21:271.
   
Sonderegger J, Karrer U, Huber B, Etter G, Wingeier B, Carp P, Lecomte T D, Iff M, Calmy A, Posfay-Barbe K, Boggian K, Tarr P. Infektiöse Mononukleose: Update für die Praxis. Primary and Hospital Care 2021; 21:194-200.
   
Berger H, Hofmann Y, Wingeier B, Huber B, Boggian K, Hug-Batschelett H, Rosamilia C, Mosimann P, Bielicki J, Horvath L, Hotz M A, Dettwiler A, Furi S, Diana A, Von Schön-Angerer T, Peters N, Merz A, Hetzel P, Simma L, Guggenheim R, Stöckli S, CAo V H, Pandolfi F, Etter G, Gallmann C, Christinet V, Avoledo P, Rowedder A, Hasse B, Posfay-Barbe K, Senn L, Tarr P. Behandlung der Streptokokkenangina ohne Antibiotika. Primary and Hospital Care 2021; 21:360-367.
   
Darling K E A, Locatelli I, Benghalem N, Nadin I, Calmy A, Gutbrod K, Hauser C, Brugger P, Hasse B, Kovari H, Kunze U, Stoeckle M, Fux C, Rossi S, Di Benedetto C, Früh S, Schmid P, Tarr P E, Daeppen J B, Du Pasquier R, Cavassini M, NAMACO Study Group, Swiss HIV Cohort Study . Alcohol consumption and neurocognitive deficits in people with well-treated HIV in Switzerland. PLoS One 2021; 16:e0246579.
   
Balakrishna S, Salazar-Vizcaya L, Schmidt A J, Kachalov V, Kusejko K, Thurnheer M C, Roth J A, Nicca D, Cavassini M, Battegay M, Schmid P, Bernasconi E, Günthard H F, Rauch A, Kouyos R D, Swiss HIV Cohort Study (SHCS) . Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Comput Biol 2021; 17:e1009529.
   
Barnsteiner S, Baty F, Albrich W C, Babouee Flury B, Gasser M, Plüss-Suard C, Schlegel M, Kronenberg A, Kohler P, Swiss Centre For Antibiotic Resistance (ANRESIS) . Antimicrobial resistance and antibiotic consumption in intensive care units, Switzerland, 2009 to 2018. Euro Surveill 2021; 26:.
   
Thiabaud A, Iten A, Balmelli C, Senn L, Troillet N, Widmer A, Flury D, Schreiber P W, Vázquez M, Damonti L, Buettcher M, Vuichard-Gysin D, Kuhm C, Cusini A, Riedel T, Nussbaumer-Ochsner Y, Gaudenz R, Heininger U, Berger C, Zucol F, Bernhard-Stirnemann S, Corti N, Zimmermann P, Uka A, Niederer-Loher A, Gardiol C, Roelens M, Keiser O. Cohort profile: SARS-CoV-2/COVID-19 hospitalised patients in Switzerland. Swiss Med Wkly 2021; 151:w20475.
   
Rakic M, Jaboyedoff M, Bachmann S, Berger C, Diezi M, Do Canto P, Forrest C B, Frey U, Fuchs O, Gervaix A, Gluecksberg A S, Grotzer M, Heininger U, Kahlert C R, Kaiser D, Kopp M V, Lauener R, Neuhaus T J, Paioni P, Posfay-Barbe K, Ramelli G P, Simeoni U, Simonetti G, Sokollik C, Spycher B D, Kuehni C E. Clinical data for paediatric research: the Swiss approach : Proceedings of the National Symposium in Bern, Switzerland, Dec 5-6, 2019. BMC Proc 2021; 15:19.
   
Chorazka M, Flury D, Herzog K, Albrich W, Vuichard-Gysin D. Clinical outcomes of adults hospitalized for laboratory confirmed respiratory syncytial virus or influenza virus infection. PLoS One 2021; 16:e0253161.
   
Hachfeld A, Atkinson A, Calmy A, De Tejada B M, Hasse B, Paioni P, Kahlert C R, Boillat-Blanco N, Stoeckle M, Aebi-Popp K, Swiss HIV Cohort Study, The Swiss Mother, Child HIV Cohort Study (MoCHiV) . Decrease of condom use in heterosexual couples and its impact on pregnancy rates: the Swiss HIV Cohort Study (SHCS). HIV Med 2021;.
   
Chappell E, Kohns Vasconcelos M, Goodall R L, Galli L, Goetghebuer T, Noguera-Julian A, Rodrigues L C, Scherpbier H, Smit C, Bamford A, Crichton S, Navarro M L, Ramos J T, Warszawski J, Spolou V, Chiappini E, Venturini E, Prata F, Kahlert C R, Marczynska M, Marques L, Naver L, Thorne C, Gibb D M, Giaquinto C, Judd A, Collins I J, European Pregnancy And Paediatric Infections Cohort Collaboration (EPPICC) . Children living with HIV in Europe: do migrants have worse treatment outcomes?. HIV Med 2021;.
   
Scherrer A U, Traytel A, Braun D L, Calmy A, Battegay M, Cavassini M, Furrer H, Schmid P, Bernasconi E, Stoeckle M, Kahlert C R, Trkola A, Kouyos R D, Tarr P, Marzolini C, Wandeler G, Fellay J, Bucher H, Yerly S, Suter F, Hirsch H, Huber M, Dollenmaier G, Perreau M, Martinetti G, Rauch A, Günthard H F, Swiss HIV Cohort Study (SHCS) . Cohort Profile Update: The Swiss HIV Cohort Study (SHCS). Int J Epidemiol 2021;.
   
Schoepf I C, Thorball C W, Ledergerber B, Engel T, Raffenberg M, Kootstra N A, Reiss P, Hasse B, Marzolini C, Thurnheer C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Kouyos R, Günthard H F, Fellay J, Tarr P E, Swiss HIV Cohort Study . Coronary Artery Disease-Associated and Longevity-Associated Polygenic Risk Scores for Prediction of Coronary Artery Disease Events in Persons Living With Human Immunodeficiency Virus: The Swiss HIV Cohort Study. Clin Infect Dis 2021; 73:1597-1604.
   
Hovaguimian F, Günthard H F, Hauser C, Conen A, Bernasconi E, Calmy A, Cavassini M, Seneghini M, Marzel A, Heinrich H, Scherrer A, Riou J, Spoerri A, Schmidlin K, Balakrishna S, Braun D L, Rampini S K, Fehr J S, Kouyos R D, Swiss HIV Cohort Study . Data linkage to evaluate the long-term risk of HIV infection in individuals seeking post-exposure prophylaxis. Nat Commun 2021; 12:1219.
   
Weber M C, Risch M, Thiel S L, Grossmann K, Nigg S, Wohlwend N, Lung T, Hillmann D, Ritzler M, Ferrara F, Bigler S, Egli K, Bodmer T, Imperiali M, Salimi Y, Fleisch F, Cusini A, Heer S, Renz H, Paprotny M, Kohler P, Vernazza P, Risch L, Kahlert C R. Characteristics of Three Different Chemiluminescence Assays for Testing for SARS-CoV-2 Antibodies. Dis Markers 2021; 2021:8810196.
   
Héquet D, Kessler S, Rettenmund G, Lemmenmeier E, Qalla-Widmer L, Gardiol C, Münzer T, Schlegel M, Petignat C, Kohler P. Healthcare-associated infections and antibiotic use in long-term care residents from two geographical regions in Switzerland. J Hosp Infect 2021; 117:172-178.
   
Leal-Neto O, Egger T, Schlegel M, Flury D, Sumer J, Albrich W, Babouee Flury B, Kuster S, Vernazza P, Kahlert C R, Kohler P. Digital SARS-CoV-2 Detection Among Hospital Employees: Participatory Surveillance Study. JMIR Public Health Surveill 2021; 7:e33576.
   
Kusejko K, Neofytos D, Hirsch H H, Meylan P, Boggian K, Hirzel C, Garzoni C, Kouyos R D, Mueller N J, Schreiber P W, Swiss Transplant Cohort Study . Differences Between Infectious Disease Events in First Liver Transplant Versus Retransplantation in the Swiss Transplant Cohort Study. Liver Transpl 2021; 27:1283-1290.
   
Roelens M, Martin A, Friker B, Sousa F M, Thiabaud A, Vidondo B, Buchter V, Gardiol C, Vonlanthen J, Balmelli C, Battegay M, Berger C, Buettcher M, Cusini A, Flury D, Heininger U, Niederer-Loher A, Riedel T, Schreiber P W, Sommerstein R, Troillet N, Tschudin-Sutter S, Vetter P, Bernhard-Stirnemann S, Corti N, Gaudenz R, Marschall J, Nussbaumer-Ochsner Y, Senn L, Vuichard-Gysin D, Zimmermann P, Zucol F, Iten A, Keiser O. Evolution of COVID-19 mortality over time: results from the Swiss hospital surveillance system (CH-SUR). Swiss Med Wkly 2021; 151:w30105.
   
Schmiedeberg K, Vuilleumier N, Pagano S, Albrich W, Ludewig B, Von Kempis J, Rubbert-Roth A. Efficacy and tolerability of a third dose of an mRNA anti-SARS-CoV-2 vaccine in patients with rheumatoid arthritis with absent or minimal serological response to two previous doses. Lancet Rheumatol 2021; 4:e11-e13.
   
Ragozzino S, Goldenberger D, Wright P R, Zimmerli S, Mühlethaler K, Neofytos D, Riat A, Boggian K, Nolte O, Conen A, Fankhauser H, Schreiber P W, Zbinden R, Lamoth F, Khanna N. Distribution of Species and Prevalence of Azole Resistance in Respiratory Samples From Swiss Tertiary Care Hospitals. Open Forum Infect Dis 2021; 9:ofab638.
   
Metsini A, Widmer A, Zingg W, Gardiol C, Vuichard-Gysin D, Eder M, Maag J, Schlegel M, Marschall J, Harbarth S, Sommerstein R, The Swissnoso Network . Evaluation of existing and desired measures to monitor, prevent and control healthcare-associated infections in Swiss hospitals. Swiss Med Wkly 2021; 151:w20516.
   
Van Den Bogaart L, Lang B M, Neofytos D, Egli A, Walti L N, Boggian K, Garzoni C, Berger C, Pascual M, Van Delden C, Mueller N J, Manuel O, Mombelli M, Swiss Transplant Cohort Study . Epidemiology and outcomes of medically attended and microbiologically confirmed bacterial foodborne infections in solid organ transplant recipients. Am J Transplant 2021;.
   
Duran Ramirez J J, Ballouz T, Nguyen H, Kusejko K, Chaudron S E, Huber M, Hirsch H H, Perreau M, Ramette A, Yerly S, Cavassini M, Stöckle M, Furrer H, Vernazza P, Bernasconi E, Günthard H F, Kouyos R D, Swiss HIV Cohort Study . Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. J Infect Dis 2021;.
   
Balakrishna S, Wolfensberger A, Kachalov V, Roth J A, Kusejko K, Scherrer A U, Furrer H, Hauser C, Calmy A, Cavassini M, Schmid P, Bernasconi E, Battegay M, Günthard H F, Kouyos R D. Decreasing incidence and determinants of Bacterial Pneumonia in people with HIV: The Swiss HIV Cohort Study. J Infect Dis 2021;.
   
Rossel A, Zandberg K P M, Albrich W, Huttner A. How representative is a point-of-care randomized trial? Clinical outcomes of patients excluded from a point-of-care randomized controlled trial evaluating antibiotic duration for Gram-negative bacteraemia: a multicentre prospective observational cohort study. Clin Microbiol Infect 2021; 28:297.e1-297.e6.
   
Nguyen H, Hampel B, Nuñez D G, Battegay M, Hachfeld A, Bernasconi E, Calmy A, Cavassini M, Vernazza P, Fellay J, Rudolph H, Huber M, Leuzinger K, Perreau M, Scherrer A, Ramette A N, Yerly S, Günthard H F, Kouyos R D, Kusejko K, Swiss HIV Cohort Study . Identifying and Characterizing Trans women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group. Clin Infect Dis 2021;.
   
Bregenzer A, Bruggmann P, Castro E, Moriggia A, Rothen M, Thurnheer M C, Vernazza P, Scheidegger C. Hepatitis C virus elimination in Swiss opioid agonist therapy programmes - the SAMMSU cohort. Swiss Med Wkly 2021; 151:w20460.
   
Kohler P, Guesewell S, Seneghini M, Egger T, Leal O, Brucher A, Lemmenmeier E, Möller J C, Rieder P, Ruetti M, Stocker R, Vuichard-Gysin D, Wiggli B, Besold U, Kuster S, McGeer A, Risch L, Friedl A, Schlegel M, Vernazza P, Kahlert C R. Impact of baseline SARS-CoV-2 antibody status on syndromic surveillance and the risk of subsequent COVID-19-a prospective multicenter cohort study. BMC Med 2021; 19:270.
   
Boggian K. Infektiologische Probleme in der Onkologie. OncoMag 2021; 4:30-35.
   
Sendi P, Hasse B, Frank M, Flückiger U, Boggian K, Guery B, Jeger R, Zbinden S, Agyeman P, Knirsch W, Greutmann M. Infective endocarditis: prevention and antibiotic prophylaxis. Swiss Med Wkly 2021; 151:w20473.
   
Rüeger S, Hammer C, Loetscher A, McLaren P J, Lawless D, Naret O, Khanna N, Bernasconi E, Cavassini M, Günthard H F, Kahlert C R, Rauch A, Depledge D P, Morfopoulou S, Breuer J, Zdobnov E, Fellay J, Swiss HIV Cohort Study . Author Correction: The influence of human genetic variation on Epstein-Barr virus sequence diversity. Sci Rep 2021; 11:8946.
   
Adam K M, Osthoff M, Lamoth F, Conen A, Erard V, Boggian K, Schreiber P W, Zimmerli S, Bochud P Y, Neofytos D, Fleury M, Fankhauser H, Goldenberger D, Mühlethaler K, Riat A, Zbinden R, Kronenberg A, Quiblier C, Marchetti O, Khanna N, Fungal Infection Network Of Switzerland (FUNGINOS) . Trends of the Epidemiology of Candidemia in Switzerland: A 15-Year FUNGINOS Survey. Open Forum Infect Dis 2021; 8:ofab471.
   
Ziga M, Gianoli D, Waldeck F, Dennler C, Schlichtherle-Pohle R, Forster T, Martens B, Schwizer R. Spondylodiscitis due to anaerobic bacteria Veillonella parvula: Case report and literature review. 2021;.
   
Baerlocher S, Helfenstein S, Mahr A, Crippa S, Garcia Boy R, Kahlert C R, Yurttas T, Hatz C, Kohler P. Leptospirosis Followed by Kawasaki-Like Disease: Case Report From an Adult Swiss Patient and Review of the Literature. Open Forum Infect Dis 2021; 8:ofab088.
   
Dmitrijeva M, Kahlert C R, Feigelman R, Kleiner R L, Nolte O, Albrich W, Baty F, Von Mering C. Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. mBio 2021; 12:.
   
Boesch M, Baty F, Albrich W, Flatz L, Rodriguez R, Rothschild S I, Joerger M, Früh M, Brutsche M. Local tumor microbial signatures and response to checkpoint blockade in non-small cell lung cancer. Oncoimmunology 2021; 10:1988403.
   
Vouga M, Favre G, Martinez-Perez O, Pomar L, Acebal L F, Abascal-Saiz A, Hernandez M R V, Hcini N, Lambert V, Carles G, Sichitiu J, Salomon L, Stirnemann J, Ville Y, De Tejada B M, Goncé A, Hawkins-Villarreal A, Castillo K, Solsona E G, Trigo L, Cleary B, Geary M, Bartels H, Al-Kharouf F, Malone F, Higgins M, Keating N, Knowles S, Poncelet C, Ribeiro-do-Valle C C, Surita F, Dantas-Silva A, Borrelli C, Luz A G, Fuenzalida J, Carvajal J, Canales M G, Hernandez O, Grechukhina O, Ko A I, Reddy U, Figueiredo R, Moucho M, Pinto P V, De Luca C, De Santis M, De Campos D A, Martins I, Garabedian C, Subtil D, Bohrer B, Da Rocha Oppermann M L, Wender M C O, Schuler-Faccini L, Sanseverino M T V, Giugliani C, Friedrich L, Scherer M H, Mottet N, Ducarme G, Pelerin H, Moreau C, Breton B, Quibel T, Rozenberg P, Giannoni E, Granado C, Monod C, Mueller D, Hoesli I, Bassler D, Heldstab S, Kölble N O, Sentilhes L, Charvet M, Deprest J, Richter J, Van Der Veeken L, Eggel-Hort B, Plantefeve G, Derouich M, Calvache A J N, Lopez-Giron M C, Burgos-Luna J M, Escobar-Vidarte M F, Hecher K, Tallarek A C, Hadar E, Haratz K K, Amikam U, Malinger G, Maymon R, Yogev Y, Schäffer L, Toussaint A, Rossier M C, De Sa R A M, Grawe C, Aebi-Popp K, Radan A P, Raio L, Surbek D, Böckenhoff P, Strizek B, Kaufmann M, Bloch A, Boulvain M, Johann S, Heldstab S A, Bernasconi M T, Grant G, Feki A, Brochut A C M, Giral M, Sedille L, Papadia A, Brugger R C, Weber B, Fischer T, Kahlert C R, Saines K N, Cambou M, Kanellos P, Chen X, Yin M, Haessig A, Ackermann S, Baud D, Panchaud A. Maternal outcomes and risk factors for COVID-19 severity among pregnant women. Sci Rep 2021; 11:13898.
   
Kohler P, Seiffert S N, Kessler S, Rettenmund G, Lemmenmeier E, Qalla Widmer L, Nolte O, Seth-Smith H M B, Albrich W, Babouee Flury B, Gardiol C, Harbarth S, Münzer T, Schlegel M, Petignat C, Egli A, Héquet D. Molecular Epidemiology and Risk Factors for Extended-Spectrum β-Lactamase-Producing Enterobacterales in Long-Term Care Residents. J Am Med Dir Assoc 2021;.
   
Damas J, Ledergerber B, Nadin I, Tarr P E, Stoeckle M, Kunze U, Hauser C, Gutbrod K, Calmy A, Assal F, Schmid P, Hundsberger T, Di Benedetto C, Rossi S, Hasse B, Schlosser L, Du Pasquier R, Darling K E A, Cavassini M, And The NAMACO Study Group . Neurocognitive course at 2-year follow-up in a Swiss cohort of people with well-treated HIV. AIDS 2021; 35:2469-2480.
   
Urwyler P, Charitos P, Moser S, Heijnen I A F M, Trendelenburg M, Thoma R, Sumer J, Camacho-Ortiz A, Bacci M R, Huber L C, Stüssi-Helbling M, Albrich W, Sendi P, Osthoff M. Recombinant human C1 esterase inhibitor (conestat alfa) in the prevention of severe SARS-CoV-2 infection in hospitalized patients with COVID-19: A structured summary of a study protocol for a randomized, parallel-group, open-label, multi-center pilot trial (PROTECT-COVID-19). Trials 2021; 22:1.
   
Maximiano Sousa F, Roelens M, Fricker B, Thiabaud A, Iten A, Cusini A, Flury D, Buettcher M, Zukol F, Balmelli C, Zimmermann P, Troillet N, Vuichard-Gysin D, Schreiber P W, Bernhard-Stirnemann S, Tschudin-Sutter S, Nussbaumer-Ochsner Y, Sommerstein R, Gaudenz R, Marschall J, Senn L, Gardiol C, Keiser O, Schüpbach G, Wymann M, Vidondo B, Ch-Sur Study Group . Risk factors for severe outcomes for COVID-19 patients hospitalised in Switzerland during the first pandemic wave, February to August 2020: prospective observational cohort study. Swiss Med Wkly 2021; 151:w20547.
   
Hovaguimian F, Martin E, Reinacher M, Rasi M, Schmidt A J, Bernasconi E, Boffi El Amari E, Braun D L, Calmy A, Darling K, Christinet V, Depmeier C, Hauser C, Läuchli S, Notter J, Stoeckle M, Surial B, Vernazza P, Bruggmann P, Tarr P, Haerry D, Bize R, Low N, Lehner A, Böni J, Kouyos R D, Fehr J S, Hampel B. Participation, retention and uptake in a multicentre pre-exposure prophylaxis cohort using online, smartphone-compatible data collection. HIV Med 2021; 23:146-158.
   
Michels L, Hörburger D, Brenner R, Walter A L, Mühlethaler K, Kohler P. Radiologischer Zufallsbefund nach Südafrikareise. Swiss Medical Forum 2021; 2021:456-458.
   
Courlet P, Barbieux C, Sculier D, Wandeler G, Stoeckle M, Bernasconi E, Braun D, Vernazza P, Cavassini M, Marinosci A, Smit M, Günthard H F, Schmid P, Limacher A, Guidi M, Alves Saldanha S, Decosterd L A, Calmy A. Pharmacokinetic parameters and weight change in HIV patients newly switched to dolutegravir-based regimens in SIMPL'HIV clinical trial. Br J Clin Pharmacol 2021;.
   
Künzler-Heule P, Fierz K, Schmidt A J, Rasi M, Bogdanovic J, Kocher A, Engberg S, Battegay M, Nöstlinger C, Lehner A, Kouyos R, Schmid P, Braun D L, Fehr J, Nicca D. Response to a sexual risk reduction intervention provided in combination with hepatitis C treatment by HIV/HCV co-infected men who have sex with men: a reflexive thematic analysis. BMC Infect Dis 2021; 21:319.
   
Kahlert C R, Persi R, Guesewell S, Egger T, Leal-Neto O B, Sumer J, Flury D, Brucher A, Lemmenmeier E, Möller J C, Rieder P, Stocker R, Vuichard-Gysin D, Wiggli B, Albrich W, Babouee Flury B, Besold U, Fehr J, Kuster S P, McGeer A, Risch L, Schlegel M, Friedl A, Vernazza P, Kohler P. Non-occupational and occupational factors associated with specific SARS-CoV-2 antibodies among hospital workers - A multicentre cross-sectional study. Clin Microbiol Infect 2021; 27:1336-1344.
   
Hasan Ali O, Bomze D, Risch L, Brugger S D, Paprotny M, Weber M, Thiel S, Kern L, Albrich W, Kohler P, Kahlert C R, Vernazza P, Bühler P K, Schüpbach R A, Gómez-Mejia A, Popa A M, Bergthaler A, Penninger J M, Flatz L. Severe Coronavirus Disease 2019 (COVID-19) is Associated With Elevated Serum Immunoglobulin (Ig) A and Antiphospholipid IgA Antibodies. Clin Infect Dis 2021; 73:e2869-e2874.
   
Kohler P, Jonsdottir H R, Risch L, Vernazza P, Ackermann-Gäumann R, Kahlert C R. No neutralizing effect of pre-existing tick-borne encephalitis virus antibodies against severe acute respiratory syndrome coronavirus-2: a prospective healthcare worker study. Sci Rep 2021; 11:24198.
   
Seneghini M, Petermichl V, Frei R, Bucher C, Baumann S, Kohler P. Microsporidiosis in a solid organ transplant recipient. Int J Infect Dis 2021; 108:18-19.
   
Schoepf I C, Thorball C W, Ledergerber B, Kootstra N A, Reiss P, Raffenberg M, Engel T, Braun D L, Hasse B, Thurnheer C, Marzolini C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Arribas J R, Kouyos R D, Fellay J, Günthard H F, Tarr P E, Swiss HIV Cohort Study . Telomere Length Declines In Persons Living With HIV Before Antiretroviral Therapy Start But Not After Viral Suppression: A Longitudinal Study Over >17 Years. J Infect Dis 2021;.
   
Nguyen H, Thorball C W, Fellay J, Böni J, Yerly S, Perreau M, Hirsch H H, Kusejko K, Thurnheer M C, Battegay M, Cavassini M, Kahlert C R, Bernasconi E, Günthard H F, Kouyos R D, Swiss HIV Cohort Study . Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link. Elife 2021; 10:.
   
Maraolo A E, Corcione S, Grossi A, Signori A, Alicino C, Hussein K, Trecarichi E M, Viale P, Timsit J F, Veeraraghavan B, Villegas M V, Rahav G, Daikos G L, Vardakas K Z, Roilides E, Uhlemann A C, Ghafur A K, Mornese Pinna S, Bassetti M, Kohler P, Giacobbe D R. The Impact of Carbapenem Resistance on Mortality in Patients With Klebsiella Pneumoniae Bloodstream Infection: An Individual Patient Data Meta-Analysis of 1952 Patients. Infect Dis Ther 2021;.
   
Kohler P, Wolfensberger A, Stampf S, Brönnimann A, Boggian K, Van Delden C, Favre M, Hirzel C, Khanna N, Kuster S P, Manuel O, Neofytos D, Ragozzino S, Schreiber P W, Walti L, Mueller N J, Swiss Transplant Cohort Study . Temporal trends, risk factors and outcomes of infections due to extended-spectrum β-lactamase producing Enterobacterales in Swiss solid organ transplant recipients between 2012 and 2018. Antimicrob Resist Infect Control 2021; 10:50.
   
Surial B, Bertholet N, Daeppen J B, Darling K E A, Calmy A, Günthard H F, Stöckle M, Bernasconi E, Schmid P, Rauch A, Furrer H, Wandeler G, The Swiss HIV Cohort Study . The Impact of Binge Drinking on Mortality and Liver Disease in the Swiss HIV Cohort Study. J Clin Med 2021; 10:.
   
Oyewole O R A, Lang P, Albrich W, Wissel K, Leib S L, Casanova C, Hilty M. The Impact of Pneumococcal Conjugate Vaccine (PCV) Coverage Heterogeneities on the Changing Epidemiology of Invasive Pneumococcal Disease in Switzerland, 2005-2019. Microorganisms 2021; 9:.
   
Hartmann J E, Albrich W, Dmitrijeva M, Kahlert C R. The Effects of Corticosteroids on the Respiratory Microbiome: A Systematic Review. Front Med (Lausanne) 2021; 8:588584.
   
Von Hammerstein A L, Aebi C, Barbey F, Berger C, Buettcher M, Casaulta C, Egli A, Gebauer M, Guerra B, Kahlert C R, Kellner E, Kottanattu L, Opota O, Mann C, Meyer Sauteur P, Plebani M, Ritz N, Testi C, Von Niederhäusern V, Wagner N, Zimmermann P, Zucol F, Agyeman P K A, Trück J. Interseasonal RSV infections in Switzerland - rapid establishment of a clinician-led national reporting system (RSV EpiCH). Swiss Med Wkly 2021; 151:w30057.
   
Jaboyedoff M, Rakic M, Bachmann S, Berger C, Diezi M, Fuchs O, Frey U, Gervaix A, Glücksberg A S, Grotzer M, Heininger U, Kahlert C R, Kaiser D, Kopp M V, Lauener R, Neuhaus T J, Paioni P, Posfay-Barbe K, Ramelli G P, Simeoni U, Simonetti G, Sokollik C, Spycher B D, Kuehni C E. SwissPedData: Standardising hospital records for the benefit of paediatric research. Swiss Med Wkly 2021; 151:w30069.
   
Kusejko K, Auñón , Jost B, Natividad B, Strahm C, Thurnheer C, Pablo-Marcos D, Slama D, Scanferla G, Uckay I, Waldmann I, Esteban J, Lora-Tamayo J, Clauss M, Fernandez-Sampedro M, Wouthuyzen-Bakker M, Ferrari M C, Gassmann N, Sendi P, Jent P, Morand P C, Vijayvargiya P, Trebše R, Patel R, Kouyos R D, Corvec S, Kramer T S, Stadelmann V A, Achermann Y. The Impact of Surgical Strategy and Rifampin on Treatment Outcome in Cutibacterium Periprosthetic Joint Infections. Clin Infect Dis 2021; 72:e1064-e1073.
   
Rüeger S, Hammer C, Loetscher A, McLaren P J, Lawless D, Naret O, Khanna N, Bernasconi E, Cavassini M, Günthard H F, Kahlert C R, Rauch A, Depledge D P, Morfopoulou S, Breuer J, Zdobnov E, Fellay J, Swiss HIV Cohort Study . The influence of human genetic variation on Epstein-Barr virus sequence diversity. Sci Rep 2021; 11:4586.
   
Von Lucadou M, Strahm C, Potz S, Toepfer A, Weber M, Passavanti Z, Neumann T. [A several-week history of inflammatory changes in the right foot and right hand of a 57-year-old male patient]. Internist (Berl) 2021; 62:555-561.
   
Seneghini M, Albrich W. [50/m-Headache, cough and myalgia : Preparation for the medical specialist examination: part 88]. Internist (Berl) 2021; 62:571-574.
   
Surial B, Mugglin C, Calmy A, Cavassini M, Günthard H F, Stöckle M, Bernasconi E, Schmid P, Tarr P E, Furrer H, Ledergerber B, Wandeler G, Rauch A, Swiss HIV Cohort Study . Weight and Metabolic Changes After Switching From Tenofovir Disoproxil Fumarate to Tenofovir Alafenamide in People Living With HIV : A Cohort Study. Ann Intern Med 2021; 174:758-767.
   
Seneghini M, Albrich W. [58/m-fever, cough and severe hypoxemia : Preparation for the medical specialist examination: part 65]. Internist (Berl) 2021; 62:435-439.
   
Ewig S, Kolditz M, Pletz M, Altiner A, Albrich W, Drömann D, Flick H, Gatermann S, Krüger S, Nehls W, Panning M, Rademacher J, Rohde G, Rupp J, Schaaf B, Heppner H J, Krause R, Ott S, Welte T, Witzenrath M. [Management of Adult Community-Acquired Pneumonia and Prevention - Update 2021 - Guideline of the German Respiratory Society (DGP), the Paul-Ehrlich-Society for Chemotherapy (PEG), the German Society for Infectious Diseases (DGI), the German Society of Medical Intensive Care and Emergency Medicine (DGIIN), the German Viological Society (DGV), the Competence Network CAPNETZ, the German College of General Practitioneers and Family Physicians (DEGAM), the German Society for Geriatric Medicine (DGG), the German Palliative Society (DGP), the Austrian Society of Pneumology Society (ÖGP), the Austrian Society for Infectious and Tropical Diseases (ÖGIT), the Swiss Respiratory Society (SGP) and the Swiss Society for Infectious Diseases Society (SSI)]. Pneumologie 2021; 75:665-729.
   
Kahlert C R, Cipriani M, Vernazza P. Novel dual HIV maintenance therapy with nevirapine plus lamivudine retain viral suppression through 144 weeks-A proof-of-concept study. PLoS ONE 2020; 15:e0237770.
   
Waldeck F, Boroli F, Suh N, Wendel Garcia P D, Flury D, Notter J, Iten A, Kaiser L, Schrenzel J, Boggian K, Maggiorini M, Pugin J, Kleger G R, Albrich W. Influenza-associated aspergillosis in critically-ill patients-a retrospective bicentric cohort study. Eur J Clin Microbiol Infect Dis 2020; 39:1915-1923.
   
Greiter B M, Kahlert C R, Eberhard N, Sultan-Beyer L, Berger C, Paioni P. Lymphocyte Subsets in HIV-Exposed Uninfected Infants: The Impact of Neonatal Postexposure Prophylaxis With Zidovudine. Open Forum Infect Dis 2020; 7:ofaa108.
   
Schmidt A J, Rasi M, Esson C, Christinet V, Ritzler M, Lung T, Hauser C V, Stöckle M, Jouinot F, Lehner A, Lange K, Konrad T, Vernazza P. The Swiss STAR trial - an evaluation of target groups for sexually transmitted infection screening in the sub-sample of men. Swiss Med Wkly 2020; 150:w20392.
   
Reichmuth M L, Chaudron S E, Bachmann N, Nguyen H, Böni J, Metzner K J, Perreau M, Klimkait T, Yerly S, Hirsch H H, Hauser C, Ramette A, Vernazza P, Cavassini M, Bernasconi E, Günthard H F, Kusejko K, Kouyos R D, Swiss HIV Cohort Study . Using longitudinally sampled viral nucleotide sequences to characterize the drivers of HIV-1 transmission. HIV Med 2020;.
   
Signer J, Jonsdottir H R, Albrich W, Strasser M, Züst R, Ryter S, Ackermann-Gäumann R, Lenz N, Siegrist D, Suter A, Schoop R, Engler O B. In vitro virucidal activity of Echinaforce®, an Echinacea purpurea preparation, against coronaviruses, including common cold coronavirus 229E and SARS-CoV-2. Virol J 2020; 17:136.
   
Borghesi A, Trück J, Asgari S, Sancho-Shimizu V, Agyeman P K A, Bellos E, Giannoni E, Stocker M, Posfay-Barbe K M, Heininger U, Bernhard-Stirnemann S, Niederer-Loher A, Kahlert C R, Natalucci G, Relly C, Riedel T, Kuehni C E, Thorball C W, Chaturvedi N, Martinon-Torres F, Kuijpers T W, Coin L, Wright V, Herberg J, Levin M, Aebi C, Berger C, Fellay J, Schlapbach L J, EUCLIDS Consortium And The Swiss Paediatric Sepsis Study . Whole-exome sequencing for the identification of rare variants in primary immunodeficiency genes in children with sepsis - a prospective population-based cohort study. Clin Infect Dis 2020;.
   
Schreiber P W, Kusejko K, Bischoff-Ferrari H A, Boggian K, Bonani M, Van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch H H, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller N J, Swiss Transplant Cohort Study (STCS) . Vitamin D deficiency is common in kidney transplant recipients, but is not associated with infections after transplantation. Clin Transplant 2020;e13778.
   
Hersberger M, Schlaepfer E, Buehler M, Bochud P Y, Vernazza P, Marti-Jaun J, Nemeth J, Zwahlen M, Schmidlin K, Speck R F. Polymorphisms of SOCS-1 are associated with rapid HIV progression rate. J Acquir Immune Defic Syndr 2020;.
   
Bachmann N, Kusejko K, Nguyen H, Chaudron S E, Kadelka C, Turk T, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Rauch A, Ramette A, Vernazza P, Bernasconi E, Cavassini M, Günthard H F, Kouyos R D, Swiss HIV Cohort Study . Phylogenetic Cluster Analysis Identifies Virological and Behavioral Drivers of HIV Transmission in MSM. Clin Infect Dis 2020;.
   
Pyngottu A, Scherrer A U, Kouyos R, Huber M, Hirsch H, Perreau M, Yerly S, Calmy A, Cavassini M, Stöckle M, Furrer H, Vernazza P, Bernasconi E, Günthard H F, Swiss HIV Cohort Study . Predictors of virological failure and time to viral suppression of first line integrase inhibitor based antiretroviral treatment. Clin Infect Dis 2020;.
   
Roth J A, Franzeck F C, Balakrishna S, Lautenschlager S, Thurnheer M C, Trellu L T, Cavassini M, Vernazza P, Bernasconi E, Braun D, Kouyos R D, Battegay M, Swiss HIV Cohort Study (SHCS) . Repeated Syphilis Episodes in HIV-Infected Men Who Have Sex With Men: A Multicenter Prospective Cohort Study on Risk Factors and the Potential Role of Syphilis Immunity. Open Forum Infect Dis 2020; 7:ofaa019.
   
Kohler P, Kahlert C R, Sumer J, Flury D, Guesewell S, Leal-Neto O B, Notter J, Albrich W, Babouee Flury B, McGeer A, Kuster S, Risch L, Schlegel M, Vernazza P. Prevalence of SARS-CoV-2 antibodies among Swiss hospital workers: Results of a prospective cohort study. Infect Control Hosp Epidemiol 2020; 42:604-608.
   
Dietrich L G, Thorball C W, Ryom L, Burkhalter F, Hasse B, Thurnheer M C, Weisser M, Schmid P, Bernasconi E, Darling K E A, Buvelot H, Fellay J, Ledergerber B, Tarr P E, Swiss HIV Cohort Study . Rapid Progression of Kidney Dysfunction in Swiss People Living with HIV: Contribution of Polygenic Risk Score and D:A:D Clinical Risk Score. J Infect Dis 2020;.
   
Poissy J, Damonti L, Bignon A, Khanna N, Von Kietzell M, Boggian K, Neofytos D, Vuotto F, Coiteux V, Artru F, Zimmerli S, Pagani J L, Calandra T, Sendid B, Poulain D, Van Delden C, Lamoth F, Marchetti O, Bochud P Y, FUNGINOS , Allfun French Study Groups . Risk factors for candidemia: a prospective matched case-control study. Crit Care 2020; 24:109.
   
Albrich W, Boggian K. Levofloxacin prophylaxis in patients with myeloma. Lancet Oncol 2020; 21:e68.
   
Jamal A J, Faheem A, Farooqi L, Zhong X Z, Armstrong I, Boyd D A, Borgundvaag E, Coleman B L, Green K, Jayasinghe K, Johnstone J, Katz K, Kohler P, Salian C, Mataseje L, Melano R, Muller M P, Mulvey M R, Nayani S, Patel S N, Paterson A, Poutanen S, Rebbapragada A, Richardson D, Sarabia A, Shafinaz S, Simor A E, Willey B M, Wisely L, McGeer A J. Household Transmission of Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada. Clin Infect Dis 2020;.
   
 
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